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Species belonging to selected taxon:

Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST009967
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

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pre-miRNA
TTTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAA
TTATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACGAC


dot-bracket secondary structure
.......((((((.((((((((.(((((.((((((((((.(((((.(((((((.....(((..(((((..((((((((......))))))))..))))).
......)))......))))))).))))).)))))))))).))))).)))))))))))))).......



SIMILARITIES
miRBase ptc-MIR168b: 3e-73

PMRD ptc-miR168b: 3e-73

microPC miR168: 2e-62
UniProt no hits

RFAM MIR168: 3e-83
most similar mature miRNAs

Identical with: ptc-miR168b from PMRD (MNEST051651)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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